High-Protein Egg Muffin Cups

Featured in: Cozy Cakes, Muffins & Crumbs

These savory egg cups are packed with protein and fresh vegetables like spinach and tomatoes. Whisked eggs combine with cottage cheese and optional cheddar before being baked in muffin tins. Seasoned delicately with salt, pepper, and smoked paprika, they offer a flavorful, portable option for busy breakfasts or snacks. Variations include adding herbs or substituting cheeses to suit taste, making these egg cups versatile and easy to prepare.

Updated on Wed, 11 Feb 2026 10:27:00 GMT
High-protein egg muffin cups with spinach and tomatoes, baked golden and fluffy, packed with fresh veggies for a nutritious breakfast. Pin It
High-protein egg muffin cups with spinach and tomatoes, baked golden and fluffy, packed with fresh veggies for a nutritious breakfast. | hazelflour.com

There's something wonderfully freeing about Sunday mornings when I realized I could batch-cook breakfast and actually have time to sit down with coffee during the week. These egg muffin cups came about when I was tired of scrambling eggs at 6 AM, and I wanted something that tasted homemade but felt effortless. The spinach and tomatoes keep them fresh and colorful, while the cottage cheese adds a protein punch that makes them genuinely filling. Now they're my secret weapon for mornings when everything feels chaotic.

I made these for the first time on a Saturday when my sister was visiting with her new fitness routine that required protein at every meal. She was skeptical until she bit into one warm from the oven, and the look on her face was worth every vegetable I'd chopped. Now when she visits, she raids my fridge looking for leftovers, and I've learned to double the batch.

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Ingredients

  • Eggs: Eight large ones are your foundation—they hold everything together and provide most of your protein, so don't skimp on quality if you can help it.
  • Low-fat cottage cheese: This sneaky ingredient creates a creamy texture while boosting protein way beyond what eggs alone can do.
  • Shredded cheddar cheese: Optional but highly recommended for flavor and that little moment of melty richness in each bite.
  • Fresh baby spinach: Chop it fine so it distributes evenly, and don't worry if it seems like a lot—it wilts down considerably during baking.
  • Cherry tomatoes: Quarter them so they don't release too much liquid, which keeps the muffins from getting soggy.
  • Red bell pepper: Dice it small so the pieces actually cook through and add sweetness without overpowering the savory profile.
  • Green onions: Slice them fresh just before mixing, as they lose their brightness quickly.
  • Seasonings: Salt and pepper are non-negotiable, and smoked paprika is that optional touch that makes people ask what your secret ingredient is.
  • Olive oil spray: This prevents sticking better than butter and keeps the calorie count reasonable.

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Instructions

Get your oven ready:
Preheat to 350°F and prepare your muffin tin with olive oil spray or liners—I prefer liners because they peel away so cleanly once cooled.
Whisk the base:
In a large bowl, whisk eggs and cottage cheese together until absolutely smooth with no lumps; this takes about a minute of real elbow grease, but it's worth it for texture.
Build the mixture:
Stir in the cheddar if using, then fold in your vegetables gently so they stay evenly distributed. Season with salt, pepper, and paprika, tasting as you go.
Fill carefully:
Divide the mixture among the cups until each is about three-quarters full; overfilling causes them to puff up and spill over the sides like little egg volcanoes.
Bake with patience:
Bake for 18 to 22 minutes—your oven's personality matters here, so start checking around the 18-minute mark when the edges start looking set but the centers still jiggle slightly. They'll continue to cook as they cool.
Release and cool:
Let them sit in the tin for a few minutes before running a thin knife around the edges; this brief rest makes them way easier to remove without crumbling.
Store strategically:
Eat them warm if you can, but cool ones are perfectly delicious too. They keep in an airtight container for up to four days in the fridge and freeze beautifully for up to a month.
Savory egg muffin cups filled with spinach, tomatoes, and cheese, perfect for meal prep and healthy on-the-go mornings. Pin It
Savory egg muffin cups filled with spinach, tomatoes, and cheese, perfect for meal prep and healthy on-the-go mornings. | hazelflour.com

There's a quiet moment on weekday mornings now when I grab one of these from the fridge, reheat it in the microwave for thirty seconds, and actually have a real breakfast before racing out the door. It's become the kind of thing that changes your relationship with mornings, turning something hectic into something manageable.

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Ways to Make Them Your Own

The beauty of these muffin cups is how adaptable they are to whatever you have on hand or whatever you're craving that week. I've tried them with crumbled bacon instead of spinach, with feta cheese swapped for cheddar, even with sun-dried tomatoes when cherry tomatoes weren't in season. Once you understand the basic ratio of eggs to cottage cheese to vegetables, you can play around endlessly without worrying about ruining the texture.

Reheating and Storage Tips

These muffins are actually better when you think about them as a meal-prep project rather than something you need to eat immediately. Straight from the fridge they're fine, but a quick microwave blast for 30 to 45 seconds brings back that just-baked warmth. If you freeze them, they'll keep for a full month, and reheating is just as simple—no thawing required, just microwave straight from frozen for about 60 seconds.

Why These Work as Protein-Packed Meals

Seven grams of protein per muffin doesn't sound like much until you eat two and realize you've gotten 14 grams without any processed powder or shakes. The cottage cheese is the real MVP here because it blends invisibly while doing all the heavy lifting protein-wise. What surprised me most was how satisfied I felt eating just one or two compared to my usual rushed breakfasts, which means you're probably eating fewer calories overall without even trying.

  • Make a double batch on Sunday and you've solved breakfast for nearly two weeks straight.
  • These work equally well as a quick lunch or snack, not just a breakfast situation.
  • The combination of protein and vegetables actually keeps your energy stable instead of crashing an hour later.
Wholesome egg muffin cups featuring spinach, tomatoes, and cottage cheese, baked until golden for a high-protein breakfast or snack. Pin It
Wholesome egg muffin cups featuring spinach, tomatoes, and cottage cheese, baked until golden for a high-protein breakfast or snack. | hazelflour.com

These egg muffin cups have quietly become one of those recipes that changes how you approach feeding yourself, transforming breakfast from a daily negotiation into something you actually look forward to. Once you make them once, you'll understand why they deserve a permanent spot in your weekly routine.

Recipe FAQs

Can I use different vegetables in these egg cups?

Absolutely. You can swap spinach and tomatoes with kale, bell peppers, or zucchini for varied flavors.

What cheese options work well in this dish?

Besides cheddar, feta or goat cheese can add unique taste and creaminess.

How should the egg cups be stored?

Store cooled egg cups in an airtight container in the refrigerator for up to 4 days.

Can these be made ahead for meal prep?

Yes, they freeze well and can be reheated in the microwave for 30 to 45 seconds.

Is it possible to increase the protein content?

Incorporate cooked turkey bacon or diced ham for an extra protein boost.

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High-Protein Egg Muffin Cups

Savory egg cups with spinach, tomatoes, and added protein for easy, nutritious mornings.

Prep Time
10 minutes
Time to Cook
20 minutes
Total Duration
30 minutes
Recipe Creator Gabriel Lawson


Skill Level Easy

Cuisine Type American

Makes 4 Portions

Diet Preferences Suitable for Vegetarians, No Gluten, Low Carb

Ingredient List

Eggs & Dairy

01 8 large eggs
02 1/2 cup low-fat cottage cheese
03 1/4 cup shredded cheddar cheese, optional

Vegetables

01 1 cup fresh baby spinach, chopped
02 1 cup cherry tomatoes, quartered
03 1/4 cup red bell pepper, finely diced
04 2 green onions, sliced

Seasonings

01 1/2 teaspoon salt
02 1/4 teaspoon black pepper
03 1/4 teaspoon smoked paprika, optional

Cooking

01 Olive oil spray or muffin liners

How-To Steps

Step 01

Prepare muffin tin: Preheat oven to 350°F. Lightly grease a 12-cup muffin tin with olive oil spray or insert paper muffin liners.

Step 02

Combine egg base: In a large mixing bowl, whisk together eggs and cottage cheese until smooth. Stir in shredded cheddar cheese if using.

Step 03

Incorporate vegetables and seasonings: Add chopped spinach, cherry tomatoes, red bell pepper, and green onions to the egg mixture. Season with salt, black pepper, and smoked paprika.

Step 04

Fill muffin cups: Evenly distribute the mixture among the 12 muffin cups, filling each approximately three-quarters full.

Step 05

Bake until set: Bake for 18 to 22 minutes, or until eggs are set and tops are lightly golden brown.

Step 06

Cool and release: Remove from oven and allow to cool for several minutes. Run a knife around the edges to release, if necessary.

Step 07

Serve or store: Serve warm or cool completely before transferring to an airtight container for refrigeration up to 4 days.

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Tools Needed

  • 12-cup muffin tin
  • Mixing bowl
  • Whisk
  • Measuring cups and spoons
  • Knife and cutting board

Allergen Details

Always review ingredients for allergens. If unsure, ask a healthcare professional.
  • Contains eggs
  • Contains dairy products including cheese and cottage cheese
  • May contain traces of milk proteins

Nutrition Details (one portion)

Nutrition listed here is for guidance only. It's not a substitute for medical advice.
  • Calorie Count: 70
  • Total Fat: 3 g
  • Total Carbs: 2 g
  • Protein: 7 g

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